SCHOOL OF MEDICINE

Department of Medicine

Indiana Center for Biological Microscopy

Research

The innovations, research, and software developed at the Indiana Center for Biological Microscopy have been disseminated to the IU research community and beyond through educational programs which include seminars, workshops, courses, and individual training. The commitment of the ICBM to discovery and innovation is evidenced in the publications listed below.

Publications Utilizing the Imaging Facility

Peer reviewed publications resulting from Indiana Center for Biological Microscopy Resources are listed by year below. Papers in which images acquired either contributed to the body of the work or appeared as part of the published paper are shown.


2018

  • Basile, D.P., J.A. Collett, and M.C. Yoder, Endothelial colony-forming cells and pro-angiogenic
    cells: clarifying definitions and their potential role in mitigating acute kidney injury. Acta Physiol
    (Oxf), 2018. 222(2).
     
  • Bellchambers, H.M. and S.M. Ware, ZIC3 in Heterotaxy. Adv Exp Med Biol, 2018. 1046: p. 301-
    327.
     
  •  Chen, N.X., K.D. O'Neill, and S.M. Moe, Matrix vesicles induce calcification of recipient vascular
    smooth muscle cells through multiple signaling pathways. Kidney Int, 2018. 93(2): p. 343-354.
     
  •  Dunn, K.W., T.A. Sutton, and R.M. Sandoval, Live-Animal Imaging of Renal Function by
    Multiphoton Microscopy. Curr Protoc Cytom, 2018. 83: p. 12.9.1-12.9.25.
     
  • Eadon, M.T., et al., In Vivo siRNA Delivery and Rebound of Renal LRP2 in Mice. J Drug Deliv, 2017.
    2017: p. 4070793.
     
  • Go, E., et al., Mycophenolic acid induces senescence of vascular precursor cells. PLoS One, 2018.
    13(3): p. e0193749.
     
  • Hato, T., S. Winfree, and P.C. Dagher, Kidney Imaging: Intravital Microscopy. Methods Mol Biol,
    2018. 1763: p. 129-136.
     
  • Hato, T., et al., Endotoxin Preconditioning Reprograms S1 Tubules and Macrophages to Protect
    the Kidney. J Am Soc Nephrol, 2018. 29(1): p. 104-117.
     
  • Kolb, A.L., et al., Exogenous Gene Transmission of Isocitrate Dehydrogenase 2 Mimics Ischemic
    Preconditioning Protection. J Am Soc Nephrol, 2018.
     
  • Langer, K.B., et al., Retinal Ganglion Cell Diversity and Subtype Specification from Human
    Pluripotent Stem Cells. Stem Cell Reports, 2018.
     
  • Lee, J., et al., Hair Follicle Development in Mouse Pluripotent Stem Cell-Derived Skin Organoids.
    Cell Rep, 2018. 22(1): p. 242-254.
     
  • Mehrotra, P., et al., Th17 cells contribute to pulmonary fibrosis and inflammation during chronic
    kidney disease progression after acute ischemia. Am J Physiol Regul Integr Comp Physiol, 2018.
    314(2): p. R265-r273.
     
  • Micanovic, R., et al., Tamm-Horsfall Protein Regulates Mononuclear Phagocytes in the Kidney. J
    Am Soc Nephrol, 2018. 29(3): p. 841-856.
     
  •  Mulye, M., B. Zapata, and S.D. Gilk, Altering lipid droplet homeostasis affects Coxiella burnetii
    intracellular growth. PLoS One, 2018. 13(2): p. e0192215.
     
  • Park, Y., et al., Fractalkine induces angiogenic potential in CX3CR1-expressing monocytes. J
    Leukoc Biol, 2018. 103(1): p. 53-66.
     
  • Patel, D., et al., The histone demethylase LSD1 regulates inner ear progenitor differentiation
    through interactions with Pax2 and the NuRD repressor complex. PLoS One, 2018. 13(1):
    p.e0191689.
     
  • Pay, S.L., et al., Improving the Transduction of Bone Marrow-Derived Cells with an Integrase-
    Defective Lentiviral Vector. Hum Gene Ther Methods, 2018. 29(1): p. 44-59.
     
  • Rubart, M., et al., Electrical coupling between ventricular myocytes and myofibroblasts in the
    infarcted mouse heart. Cardiovasc Res, 2018. 114(3): p. 389-400.
     
  • Ryan, J., et al., Intravital multiphoton microscopy with fluorescent bile salts in rats as an in vivo
    biomarker for hepatobiliary transport inhibition. Drug Metab Dispos, 2018.
     
  • Thomas, Y. and E.J. Androphy, Human Papillomavirus Replication Regulation by Acetylation of a
    Conserved Lysine in the E2 Protein. J Virol, 2018. 92(3).
     
  • Varberg, K.M., et al., Kinetic Analysis of Vasculogenesis Quantifies Dynamics of Vasculogenesis
    and Angiogenesis In Vitro. J Vis Exp, 2018(131).
 

2017

  • Albuquerque, M.T.P., J. Nagata, and M.C. Bottino, Antimicrobial Efficacy of Triple Antibiotic-
    eluting Polymer Nanofibers against Multispecies Biofilm. J Endod, 2017. 43(9s): p. S51-s56.
     
  • Anjanappa, M., et al., Individualized breast cancer characterization through single cell analysis of
    tumor and adjacent-normal cells. Cancer Res, 2017. 1(10): p. 0008-5472.
     
  • Basile, D.P., J.A. Collett, and M.C. Yoder, Endothelial colony-forming cells and pro-angiogenic
    cells: clarifying definitions and their potential role in mitigating acute kidney injury. Acta Physiol
    (Oxf), 2018. 222(2).
     
  • Bijangi-Vishehsaraei, K., et al., Sulforaphane suppresses the growth of glioblastoma cells,
    glioblastoma stem cell-like spheroids, and tumor xenografts through multiple cell signaling
    pathways. J Neurosurg, 2017. 127(6): p. 1219-1230.
     
  • Bijangi-Vishehsaraei, K., et al., Sulforaphane suppresses the growth of glioblastoma cells,
    glioblastoma stem cell-like spheroids, and tumor xenografts through multiple cell signaling
    pathways. J Neurosurg, 2017. 6: p. 1-12.
     
  • Bottino, M.C., D. Pankajakshan, and J.E. Nor, Advanced Scaffolds for Dental Pulp and Periodontal
    Regeneration. Dent Clin North Am, 2017. 61(4): p. 689-711.
     
  • Brown, M.B., et al., High-intensity interval training, but not continuous training, reverses right
    ventricular hypertrophy and dysfunction in a rat model of pulmonary hypertension. Am J Physiol
    Regul Integr Comp Physiol., 2017. 312(2): p. R197-R210. doi: 10.1152/ajpregu.00358.2016. Epub
    2016 Oct 26.
     
  • Chen, N.X., K.D. O'Neill, and S.M. Moe, Matrix vesicles induce calcification of recipient vascular
    smooth muscle cells through multiple signaling pathways. Kidney Int, 2018. 93(2): p. 343-354.
     
  • Chen, Y., et al., 14-3- 3sigma Contributes to Radioresistance By Regulating DNA Repair and Cell
    Cycle via PARP1 and CHK2. Mol Cancer Res, 2017. 13(10): p. 1541-7786.
     
  • Collett, J.A., et al., Hydrodynamic Isotonic Fluid Delivery Ameliorates Moderate-to- Severe
    Ischemia-Reperfusion Injury in Rat Kidneys. J Am Soc Nephrol, 2017. 28(7): p. 2081-2092.
     
  • Collett, J.A., et al., Hydrodynamic Isotonic Fluid Delivery Ameliorates Moderate-to- Severe
    Ischemia-Reperfusion Injury in Rat Kidneys. J Am Soc Nephrol, 2017. 25(2016040404): p.
    2016040404.
     
  • Collett, J.A., et al., Endothelial colony forming cells ameliorate endothelial dysfunction via
    secreted factors following ischemia-reperfusion injury. Am J Physiol Renal Physiol, 2017.
    22(00643).
     
  • Collett, J.A., et al., Human adipose stromal cell therapy improves survival and reduces renal
    inflammation and capillary rarefaction in acute kidney injury. J Cell Mol Med, 2017. 21(7): p.
    1420-1430.
     
  • Culleton, S.P., et al., Phosphorylation of the Bovine Papillomavirus E2 Protein on Tyrosine
    Regulates Its Transcription and Replication Functions. J Virol, 2017. 91(2).
     
  • Dube, S., et al., Endothelial STAT3 Modulates Protective Mechanisms in a Mouse Ischemia-
    Reperfusion Model of Acute Kidney Injury. J Immunol Res, 2017. 2017: p. 4609502.
     
  • Dunn, K.W. and R.N. Day, Imaging cell biology and physiology in vivo using intravital microscopy.
    Methods, 2017. 128: p. 1-2.
     
  • Dunn, K.W. and J.C. Ryan, Using quantitative intravital multiphoton microscopy to dissect
    hepatic transport in rats. Methods, 2017. 128: p. 40-51.
     
  • Dunn, K.W. and J.C. Ryan, Using quantitative intravital multiphoton microscopy to dissect
    hepatic transport in rats. Methods, 2017. 20(16): p. 30446-7.
     
  • Dunn, K.W. and J.C. Ryan, Using quantitative intravital multiphoton microscopy to dissect
    hepatic transport in rats. Methods, 2017. 21(16): p. 30446-7.
     
  • Eadon, M.T., et al., In Vivo siRNA Delivery and Rebound of Renal LRP2 in Mice. J Drug Deliv, 2017.
    2017: p. 4070793.
     
  • Eadon, M.T., et al., Genetic Variants Contributing to Colistin Cytotoxicity: Identification of TGIF1
    and HOXD10 Using a Population Genomics Approach. Int J Mol Sci., 2017. 18(3).(pii): p. E661.
    doi: 10.3390/ijms18030661.
     
  • Endres, B.T., et al., Intravital imaging of the kidney in a rat model of salt-sensitive hypertension.
    Am J Physiol Renal Physiol, 2017. 313(2): p. F163-f173.
     
  • Endres, B.T., et al., Intravital Imaging of the Kidney in a Rat Model of Salt-Sensitive Hypertension.
    Am J Physiol Renal Physiol, 2017. 12(00466).
     
  • Filgueiras, L.R., et al., Imbalance between HDAC and HAT activities drives aberrant
    STAT1/MyD88 expression in macrophages from type 1 diabetic mice. J Diabetes Complications.,
    2017. 31(2): p. 334-339. doi: 10.1016/j.jdiacomp.2016.08.001. Epub 2016 Aug 7.
     
  • Garimella, P.S., et al., Association of Preoperative Urinary Uromodulin with AKI after Cardiac
    Surgery. Clin J Am Soc Nephrol., 2017. 12(1): p. 10-18. doi: 10.2215/CJN.02520316. Epub 2016
    Oct 26.
     
  • Garringer, H.J., et al., Amyloid and intracellular accumulation of BRI2. Neurobiol Aging., 2017.
    52:90-97.(doi): p. 10.1016/j.neurobiolaging.2016.12.018. Epub 2016 Dec 29.
     
  • Gohn, C.R., et al., Mesenchyme Homeobox 2 Enhances Migration of Endothelial Colony Forming
    Cells Exposed to Intrauterine Diabetes Mellitus. J Cell Physiol, 2017. 232(7): p. 1885-1892.
     
  • Guo, B., et al., Glucocorticoid hormone-induced chromatin remodeling enhances human
    hematopoietic stem cell homing and engraftment. Nat Med, 2017. 23(4): p. 424-428.
     
  • Guo, B., et al., Glucocorticoid hormone-induced chromatin remodeling enhances human
    hematopoietic stem cell homing and engraftment. Nat Med, 2017. 6(10). 
     
  • Hato, T., S. Winfree, and P.C. Dagher, Intravital imaging of the kidney. Methods, 2017. 128: p.
    33-39.
     
  • Hato, T., S. Winfree, and P.C. Dagher, Intravital imaging of the kidney. Methods, 2017. 12(16): p.
    30323-1.
     
  • Hato, T., et al., Two-Photon Intravital Fluorescence Lifetime Imaging of the Kidney Reveals Cell-
    Type Specific Metabolic Signatures. J Am Soc Nephrol, 2017. 28(8): p. 2420-2430.
     
  • Hato, T., et al., Two-Photon Intravital Fluorescence Lifetime Imaging of the Kidney Reveals Cell-
    Type Specific Metabolic Signatures. J Am Soc Nephrol, 2017. 1(2016101153): p. 2016101153. 
     
  • Hato, T., et al., Endotoxin Preconditioning Reprograms S1 Tubules and Macrophages to Protect
    the Kidney. J Am Soc Nephrol, 2018. 29(1): p. 104-117.
     
  • Hauck, P.M., et al., The fate of murine double minute X (MdmX) is dictated by distinct signaling
    pathways through murine double minute 2 (Mdm2). Oncotarget, 2017. 8(61): p. 104455-104466.
     
  • Justis, A.V., et al., Interactions between the Coxiella burnetii parasitophorous vacuole and the
    endoplasmic reticulum involve the host protein ORP1L. Cell Microbiol, 2017. 19(1).
     
  • Koehler, K.R., et al., Generation of inner ear organoids containing functional hair cells from
    human pluripotent stem cells. Nat Biotechnol, 2017. 35(6): p. 583-589.
     
  • Koehler, K.R., et al., Generation of inner ear organoids containing functional hair cells from
    human pluripotent stem cells. Nat Biotechnol, 2017. 1(10).
     
  • Kolb, A.L., et al., Exogenous Gene Transmission of Isocitrate Dehydrogenase 2 Mimics Ischemic
    Preconditioning Protection. J Am Soc Nephrol, 2018.
     
  • Lee, J., et al., Hair Follicle Development in Mouse Pluripotent Stem Cell-Derived Skin Organoids.
    Cell Rep, 2018. 22(1): p. 242-254.
     
  • McCurley, A., et al., Inhibition of alphavbeta5 Integrin Attenuates Vascular Permeability and
    Protects against Renal Ischemia-Reperfusion Injury. J Am Soc Nephrol, 2017. 6(2016020200): p.
    2016020200.
     
  • Mehrotra, P., et al., Th17 cells contribute to pulmonary fibrosis and inflammation during chronic
    kidney disease progression after acute ischemia. Am J Physiol Regul Integr Comp Physiol, 2018.
    314(2): p. R265-r273.
     
  • Mehrotra, P., et al., IL-17 mediates neutrophil infiltration and renal fibrosis following recovery
    from ischemia reperfusion: compensatory role of natural killer cells in athymic rats. Am J Physiol
    Renal Physiol., 2017. 312(3): p. F385-F397. doi: 10.1152/ajprenal.00462.2016. Epub 2016 Nov 16.
     
  • Micanovic, R., et al., Tamm-Horsfall Protein Regulates Mononuclear Phagocytes in the Kidney. J
    Am Soc Nephrol, 2018. 29(3): p. 841-856.
     
  • Moldovan, L., et al., iPSC-Derived Vascular Cell Spheroids as Building Blocks for Scaffold-Free
    Biofabrication. Biotechnol J, 2017. 12(12).
     
  • Molitoris, B.A., Rethinking CKD Evaluation: Should We Be Quantifying Basal or Stimulated GFR to
    Maximize Precision and Sensitivity? Am J Kidney Dis., 2017. 69(5): p. 675-683. doi:
    10.1053/j.ajkd.2016.11.028. Epub 2017 Feb 20.
     
  • Mulye, M., et al., Elevated Cholesterol in the Coxiella burnetii Intracellular Niche Is Bacteriolytic.
    MBio, 2017. 8(1).
     
  • Mulye, M., et al., Elevated Cholesterol in the Coxiella burnetii Intracellular Niche Is Bacteriolytic.
    MBio., 2017. 8(1).(pii): p. e02313-16. doi: 10.1128/mBio.02313-16.
     
  • Natarajan, R., et al., Chronic-Stress- Induced Behavioral Changes Associated with Subregion-
    Selective Serotonin Cell Death in the Dorsal Raphe. J Neurosci, 2017. 37(26): p. 6214-6223.
     
  • Natarajan, R., N. Northrop, and B. Yamamoto, Fluorescein Isothiocyanate (FITC)-Dextran
    Extravasation as a Measure of Blood-Brain Barrier Permeability. Curr Protoc Neurosci, 2017. 79:
    p. 9.58.1-9.58.15.
     
  • Nie, J., K.R. Koehler, and E. Hashino, Directed Differentiation of Mouse Embryonic Stem Cells Into
    Inner Ear Sensory Epithelia in 3D Culture. Methods Mol Biol, 2017. 1597: p. 67-83.
     
  • Nie, J., K.R. Koehler, and E. Hashino, Directed Differentiation of Mouse Embryonic Stem Cells Into
    Inner Ear Sensory Epithelia in 3D Culture. Methods Mol Biol, 2017. 1597:67-83.(doi): p.
    10.1007/978-1- 4939-6949- 4_6.
     
  • Park, Y., et al., Fractalkine induces angiogenic potential in CX3CR1-expressing monocytes. J
    Leukoc Biol, 2018. 103(1): p. 53-66.
     
  • Pay, S.L., et al., Improving the Transduction of Bone Marrow-Derived Cells with an Integrase-
    Defective Lentiviral Vector. Hum Gene Ther Methods, 2018. 29(1): p. 44-59.
     
  • Pelus, L.M., Stem Cell Reviews and Reports: Cell Trafficking, Stem Cell Mobilization and Homing,
    and Hematopoiesis Section. Stem Cell Rev., 2017. 13(1): p. 5. doi: 10.1007/s12015-017- 9726-4.
     
  • Rubart, M., et al., Electrical coupling between ventricular myocytes and myofibroblasts in the
    infarcted mouse heart. Cardiovasc Res, 2018. 114(3): p. 389-400.
     
  • Sandoval, R.M. and B.A. Molitoris, Intravital multiphoton microscopy as a tool for studying renal
    physiology and pathophysiology. Methods, 2017. 128: p. 20-32.
     
  • Sims, E.K., et al., MicroRNA 21 targets BCL2 mRNA to increase apoptosis in rat and human beta
    cells. Diabetologia, 2017. 9(10): p. 017-4237.
     
  • Singh, P., et al., Enzymatic cleavage of neuropeptide Y regulates a vascular gateway for stem
    cells. JCI, 2017. submitted.
     
  • Singh, P., et al., Neuropeptide Y regulates a vascular gateway for hematopoietic stem and
    progenitor cells. J Clin Invest, 2017. 127(12): p. 4527-4540.
     
  • Singh, P. and L.M. Pelus, IFN-1 Bid crosstalk: foe or friend to stem cells. Stem Cell Investig., 2017.
    4:18.(doi): p. 10.21037/sci.2017.02.06. eCollection 2017.
     
  • Thomas, Y. and E.J. Androphy, Human Papillomavirus Replication Regulation by Acetylation of a
    Conserved Lysine in the E2 Protein. J Virol, 2018. 92(3).
     
  • Vaisse, C., J.F. Reiter, and N.F. Berbari, Cilia and Obesity. Cold Spring Harb Perspect Biol, 2017.
    9(7).
     
  • Varberg, K.M., et al., Kinetic analyses of vasculogenesis inform mechanistic studies. Am J Physiol
    Cell Physiol, 2017. 312(4): p. C446-c458. 
     
  • Varberg, K.M., et al., Kinetic analyses of vasculogenesis inform mechanistic studies. Am J Physiol
    Cell Physiol, 2017. 18(00367).
     
  • Varberg, K.M., et al., Kinetic analyses of vasculogenesis inform mechanistic studies. Am J Physiol
    Cell Physiol., 2017. 312(4): p. C446-C458. doi: 10.1152/ajpcell.00367.2016. Epub 2017 Jan 18.
     
  • Wang, L., et al., Combining Intravital Fluorescent Microscopy (IVFM) with Genetic Models to
    Study Engraftment Dynamics of Hematopoietic Cells to Bone Marrow Niches. J Vis Exp,
    2017(121).
     
  • Wang, L., et al., Combining Intravital Fluorescent Microscopy (IVFM) with Genetic Models to
    Study Engraftment Dynamics of Hematopoietic Cells to Bone Marrow Niches. J Vis Exp., 2017.
    (121).(doi): p. 10.3791/54253.
     
  • Winfree, S., et al., Large-scale 3-dimensional quantitative imaging of tissues: state-of- the-art
    and translational implications. Transl Res, 2017. 189: p. 1-12.
     
  • Winfree, S. and S.D. Gilk, Quantitative Dextran Trafficking to the Coxiella burnetii
    Parasitophorous Vacuole. Curr Protoc Microbiol, 2017. 46: p. 6c.2.1-6c.2.12.
     
  • Winfree, S., T. Hato, and R.N. Day, Intravital microscopy of biosensor activities and intrinsic
    metabolic states. Methods, 2017. 128: p. 95-104.
     
  • Winfree, S., et al., Quantitative Three-Dimensional Tissue Cytometry to Study Kidney Tissue and
    Resident Immune Cells. J Am Soc Nephrol, 2017. 28(7): p. 2108-2118.
     
  • Winfree, S., et al., Quantitative Three-Dimensional Tissue Cytometry to Study Kidney Tissue and
    Resident Immune Cells. J Am Soc Nephrol, 2017. 2(2016091027): p. 2016091027.
     
  • Xie, F., et al., Kinase Activity of Fibroblast Growth Factor Receptor 3 Regulates Activity of the
    Papillomavirus E2 Protein. J Virol, 2017. 91(20).
     
  • Yin, J.Y., Z. Dong, and J.T. Zhang, eIF3 Regulation of Protein Synthesis, Tumorigenesis, and
    Therapeutic Response. Methods Mol Biol, 2017. 1507: p. 113-127.


2016

  • Amet, T., et al., Glycosylphosphatidylinositol Anchor Deficiency Attenuates the Production of
    Infectious HIV-1 and Renders Virions Sensitive to Complement Attack. AIDS Res Hum
    Retroviruses., 2016. 32(10-11): p. 1100-1112. Epub 2016 Jul 27.
     
  •  Anjanappa, M., et al., Distinct Effects of Adipose-Derived Stem Cells and Adipocytes on Normal
    and Cancer Cell Hierarchy. Mol Cancer Res., 2016. 14(7): p. 660-71. doi: 10.1158/1541-
    7786.MCR-16- 0055. Epub 2016 Apr 20.
     
  • Arpin, C.C., et al., Applying Small Molecule Signal Transducer and Activator of Transcription-3
    (STAT3) Protein Inhibitors as Pancreatic Cancer Therapeutics. Mol Cancer Ther., 2016. 15(5): p.
    794-805. doi: 10.1158/1535-7163.MCT- 15-0003. Epub 2016 Feb 12. 
     
  • Atkinson, S.J., A wandering path toward prevention for acute kidney injury. J Clin Invest., 2016.
    126(5): p. 1640-2. doi: 10.1172/JCI86826. Epub 2016 Apr 18.
     
  • Avin, K.G., et al., Skeletal Muscle Regeneration and Oxidative Stress Are Altered in Chronic Kidney
    Disease. PLoS One., 2016. 11(8): p. e0159411. doi: 10.1371/journal.pone.0159411. eCollection
    2016.
     
  • Basile, D.P., et al., Progression after AKI: Understanding Maladaptive Repair Processes to Predict
    and Identify Therapeutic Treatments. J Am Soc Nephrol., 2016. 27(3): p. 687-97. doi:
    10.1681/ASN.2015030309. Epub 2015 Oct 30.
     
  • Belmonte, J.M., et al., Virtual-tissue computer simulations define the roles of cell adhesion and
    proliferation in the onset of kidney cystic disease. Mol Biol Cell., 2016. 27(22): p. 3673-3685.
    Epub 2016 May 18.
     
  • Bijangi-Vishehsaraei, K., et al., Sulforaphane suppresses the growth of glioblastoma cells,
    glioblastoma stem cell-like spheroids, and tumor xenografts through multiple cell signaling
    pathways. J Neurosurg, 2017. 127(6): p. 1219-1230.
     
  • Bijangi-Vishehsaraei, K., et al., Sulforaphane suppresses the growth of glioblastoma cells,
    glioblastoma stem cell-like spheroids, and tumor xenografts through multiple cell signaling
    pathways. J Neurosurg, 2017. 6: p. 1-12. 
     
  • Brown, M.B., et al., High-intensity interval training, but not continuous training, reverses right
    ventricular hypertrophy and dysfunction in a rat model of pulmonary hypertension. Am J Physiol
    Regul Integr Comp Physiol., 2017. 312(2): p. R197-R210. doi: 10.1152/ajpregu.00358.2016. Epub
    2016 Oct 26.
     
  • Caspary, T., D. Marazziti, and N.F. Berbari, Methods for Visualization of Neuronal Cilia. Methods
    Mol Biol, 2016. 1454:203-14.(doi): p. 10.1007/978-1- 4939-3789- 9_13.
     
  • Collett, J.A., et al., Hydrodynamic Isotonic Fluid Delivery Ameliorates Moderate-to- Severe
    Ischemia-Reperfusion Injury in Rat Kidneys. J Am Soc Nephrol, 2017. 28(7): p. 2081-2092.
     
  • Collett, J.A., et al., Hydrodynamic Isotonic Fluid Delivery Ameliorates Moderate-to- Severe
    Ischemia-Reperfusion Injury in Rat Kidneys. J Am Soc Nephrol, 2017. 25(2016040404): p.
    2016040404.
     
  • Culleton, S.P., et al., Phosphorylation of the Bovine Papillomavirus E2 Protein on Tyrosine
    Regulates Its Transcription and Replication Functions. J Virol, 2017. 91(2).
     
  • Dagher, P.C., et al., Inhibition of Toll-Like Receptor 4 Signaling Mitigates Microvascular Loss but
    Not Fibrosis in a Model of Ischemic Acute Kidney Injury. Int J Mol Sci., 2016. 17(5).(pii): p. E647.
    doi: 10.3390/ijms17050647.
     
  • Day, R.N., W. Tao, and K.W. Dunn, A simple approach for measuring FRET in fluorescent
    biosensors using two-photon microscopy. Nat Protoc., 2016. 11(11): p. 2066-80. doi:
    10.1038/nprot.2016.121. Epub 2016 Sep 29.
     
  • de Almeida, R.M., et al., Transcriptome analysis reveals manifold mechanisms of cyst
    development in ADPKD. Hum Genomics., 2016. 10(1): p. 37.
     
  • de Braganca, A.C., et al., Vitamin D deficiency contributes to vascular damage in sustained
    ischemic acute kidney injury. Physiol Rep., 2016. 4(13).(pii): p. e12829. doi:
    10.14814/phy2.12829.
     
  • Dejani, N.N., et al., Topical Prostaglandin E Analog Restores Defective Dendritic Cell-Mediated
    Th17 Host Defense Against Methicillin-Resistant Staphylococcus Aureus in the Skin of Diabetic
    Mice. Diabetes., 2016. 65(12): p. 3718-3729. Epub 2016 Sep 7. 
     
  • DeJonge, R.E., et al., Modulation of Wnt Signaling Enhances Inner Ear Organoid Development in
    3D Culture. PLoS One., 2016. 11(9): p. e0162508. doi: 10.1371/journal.pone.0162508.
    eCollection 2016.
     
  • Endres, B.T., et al., Intravital imaging of the kidney in a rat model of salt-sensitive hypertension.
    Am J Physiol Renal Physiol, 2017. 313(2): p. F163-f173.
     
  • Endres, B.T., et al., Intravital Imaging of the Kidney in a Rat Model of Salt-Sensitive Hypertension.
    Am J Physiol Renal Physiol, 2017. 12(00466).
     
  • Filgueiras, L.R., et al., Imbalance between HDAC and HAT activities drives aberrant
    STAT1/MyD88 expression in macrophages from type 1 diabetic mice. J Diabetes Complications.,
    2017. 31(2): p. 334-339. doi: 10.1016/j.jdiacomp.2016.08.001. Epub 2016 Aug 7.
     
  • Flaig, S.M., V.H. Gattone, and B.L. Blazer-Yost, Inhibition of cyst growth in PCK and Wpk rat
    models of polycystic kidney disease with low doses of peroxisome proliferator-activated receptor
    gamma agonists. J Transl Int Med., 2016. 4(3): p. 118-126. doi: 10.1515/jtim-2016- 0028. Epub
    2016 Sep 23.
     
  • Garimella, P.S., et al., Association of Preoperative Urinary Uromodulin with AKI after Cardiac
    Surgery. Clin J Am Soc Nephrol., 2017. 12(1): p. 10-18. doi: 10.2215/CJN.02520316. Epub 2016
    Oct 26.
     
  • Garringer, H.J., et al., Effect of Systemic Iron Overload and a Chelation Therapy in a Mouse
    Model of the Neurodegenerative Disease Hereditary Ferritinopathy. PLoS One., 2016. 11(8): p.
    e0161341. doi: 10.1371/journal.pone.0161341. eCollection 2016.
     
  • Garringer, H.J., et al., Amyloid and intracellular accumulation of BRI2. Neurobiol Aging., 2017.
    52:90-97.(doi): p. 10.1016/j.neurobiolaging.2016.12.018. Epub 2016 Dec 29.
     
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2014/2015

  • Albuquerque, M. T., Ryan, S. J., Munchow, E. A., Kamocka, M. M., Gregory, R. L., Valera, M. C., and Bottino, M. C. (2015) Antimicrobial Effects of Novel Triple Antibiotic Paste-Mimic Scaffolds on Actinomyces naeslundii Biofilm, J Endod. 41, 1337-1343. doi: 1310.1016/j.joen.2015.1303.1005. Epub 2015 Apr 1325.
     
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  •  Bailey, J. C., Iyer, A. K., Renukaradhya, G. J., Lin, Y., Nguyen, H., and Brutkiewicz, R. R. (2014) Inhibition of CD1d-mediated antigen presentation by the transforming growth factor-beta/Smad signalling pathway, Immunology. 143, 679-691. doi: 610.1111/imm.12353.
     
  • Boulton, M. E. (2014) Studying melanin and lipofuscin in RPE cell culture models, Exp Eye Res. 126:61-7., 10.1016/j.exer.2014.1001.1016.
     
  • Byrd, D., Shepherd, N., Lan, J., Hu, N., Amet, T., Yang, K., Desai, M., and Yu, Q. (2014) Primary human macrophages serve as vehicles for vaccinia virus replication and dissemination, J Virol. 88, 6819- 6831. doi: 6810.1128/JVI.03726-03713. Epub 02014 Apr 03722.
     
  • Chen, Y., Damayanti, N. P., Irudayaraj, J., Dunn, K., and Zhou, F. C. (2014) Diversity of two forms of DNA methylation in the brain, Front Genet. 5:46., 10.3389/fgene.2014.00046. eCollection 02014. 
     
  • Chitteti, B. R., Kobayashi, M., Cheng, Y., Zhang, H., Poteat, B. A., Broxmeyer, H. E., Pelus, L. M., Hanenberg, H., Zollman, A., Kamocka, M. M., Carlesso, N., Cardoso, A. A., Kacena, M. A., and Srour, E. F. (2014) CD166 regulates human and murine hematopoietic stem cells and the hematopoietic niche, Blood. 124, 519-529. doi: 510.1182/blood-2014-1103-565721. Epub 562014 Apr 565716.
     
  • Condello, S., Morgan, C. A., Nagdas, S., Cao, L., Turek, J., Hurley, T. D., and Matei, D. (2015) betaCatenin-regulated ALDH1A1 is a target in ovarian cancer spheroids, Oncogene. 34, 2297-2308. doi: 2210.1038/onc.2014.2178. Epub 2014 Jun 2223.
     
  • Dunn, K. W., Lorenz, K. S., Salama, P., and Delp, E. J. (2014) IMART software for correction of motion artifacts in images collected in intravital microscopy, Intravital 3, e28210. 
     
  • El-Achkar, T. M., and Dagher, P. C. (2015) Tubular cross talk in acute kidney injury: a story of sense and sensibility, Am J Physiol Renal Physiol. 308, F1317-1323. doi: 1310.1152/ajprenal.00030.02015. Epub 02015 Apr 00015. 
     
  • Ferrell, N., Sandoval, R. M., Bian, A., Campos-Bilderback, S. B., Molitoris, B. A., and Fissell, W. H. (2015) Shear stress is normalized in glomerular capillaries following (5/6) nephrectomy, Am J Physiol Renal Physiol. 308, F588-593. doi: 510.1152/ajprenal.00290.02014. Epub 02015 Jan 00213.
     
  • Gallo, L. I., Liao, Y., Ruiz, W. G., Clayton, D. R., Li, M., Liu, Y. J., Jiang, Y., Fukuda, M., Apodaca, G., and Yin, X. M. (2014) TBC1D9B functions as a GTPase-activating protein for Rab11a in polarized MDCK cells, Mol Biol Cell. 25, 3779-3797. doi: 3710.1091/mbc.E3713-3710-0604. Epub 2014 Sep 3717. 
     
  • Hall, A. M., and Molitoris, B. A. (2014) Dynamic multiphoton microscopy: focusing light on acute kidney injury, Physiology (Bethesda). 29, 334-342. doi: 310.1152/physiol.00010.02014.
     
  • Hato, T., and Dagher, P. C. (2015) How the Innate Immune System Senses Trouble and Causes Trouble, Clin J Am Soc Nephrol. 10, 1459-1469. doi: 1410.2215/CJN.04680514. Epub 04682014 Nov 04680520.
     
  • Hato, T., Winfree, S., Kalakeche, R., Dube, S., Kumar, R., Yoshimoto, M., Plotkin, Z., and Dagher, P. C. (2015) The macrophage mediates the renoprotective effects of endotoxin preconditioning, J Am Soc Nephrol. 26, 1347-1362. doi: 1310.1681/ASN.2014060561. Epub 2014062014 Nov 2014060514. 
     
  • Iyer, A. K., Liu, J., Gallo, R. M., Kaplan, M. H., and Brutkiewicz, R. R. (2015) STAT3 promotes CD1dmediated lipid antigen presentation by regulating a critical gene in glycosphingolipid biosynthesis, Immunology 11, 12521.
     
  • Kelly, K. J., Liu, Y., Zhang, J., and Dominguez, J. H. (2015) Renal C3 complement component: feed forward to diabetic kidney disease, Am J Nephrol 41, 48-56. doi: 10.1159/000371426. Epub 000372015 Jan 000371430.
     
  • Kelly, K. J., Zhang, J., Han, L., Kamocka, M., Miller, C., Gattone, V. H., 2nd, and Dominguez, J. H. (2015) Improved Structure and Function in Autosomal Recessive Polycystic Rat Kidneys with Renal Tubular Cell Therapy, PLoS One. 10, e0131677. doi: 0131610.0131371/journal.pone.0131677. eCollection 0132015. 
     
  • Khambu, B., Wang, L., Zhang, H., and Yin, X. M. (2015) The Activation and Function of Autophagy in Alcoholic Liver Disease, Curr Mol Pharmacol 17, 17. 
     
  • Kim, H., Huang, L., Critser, P. J., Yang, Z., Chan, R. J., Wang, L., Carlesso, N., Voytik-Harbin, S. L., Bernstein, I. D., and Yoder, M. C. (2015) Notch ligand Delta-like 1 promotes in vivo vasculogenesis in human cord blood-derived endothelial colony forming cells, Cytotherapy. 17, 579-592. doi: 510.1016/j.jcyt.2014.1012.1003. Epub 2015 Jan 1012.
     
  • Kim, H. S., Chen, Q., Kim, S. K., Nickoloff, J. A., Hromas, R., Georgiadis, M. M., and Lee, S. H. (2014) The DDN catalytic motif is required for Metnase functions in non-homologous end joining (NHEJ) repair and replication restart, J Biol Chem. 289, 10930-10938. doi: 10910.11074/jbc.M10113.533216. Epub 532014 Feb 533225.
     
  • Koehler, K. R., and Hashino, E. (2014) 3D mouse embryonic stem cell culture for generating inner ear organoids, Nat Protoc 9, 1229-1244. doi: 1210.1038/nprot.2014.1100. Epub 2014 May 1221. 
     
  • Lan, J., Yang, K., Byrd, D., Hu, N., Amet, T., Shepherd, N., Desai, M., Gao, J., Gupta, S., Sun, Y., and Yu, Q. (2014) Provirus activation plus CD59 blockage triggers antibody-dependent complementmediated lysis of latently HIV-1-infected cells, J Immunol. 193, 3577-3589. doi: 3510.4049/jimmunol.1303030. Epub 1302014 Aug 1303022.
     
  • Lee, J., Condello, S., Yakubov, B., Emerson, R., Caperell-Grant, A., Hitomi, K., Xie, J., and Matei, D. (2015) Tissue Transglutaminase Mediated Tumor-Stroma Interaction Promotes Pancreatic Cancer Progression, Clin Cancer Res 3, 3. 
     
  • Lockett, A. D., Petrusca, D. N., Justice, M. J., Poirier, C., Serban, K. A., Rush, N. I., Kamocka, M., Predescu, D., Predescu, S., and Petrache, I. (2015) Scavenger receptor class B, type I-mediated uptake of A1AT by pulmonary endothelial cells, Am J Physiol Lung Cell Mol Physiol. 309, L425- 434. doi: 410.1152/ajplung.00376.02014. Epub 02015 Jun 00319.
     
  • Longworth-Mills, E., Koehler, K. R., and Hashino, E. (2015) Generating Inner Ear Organoids from Mouse Embryonic Stem Cells, Methods Mol Biol 31, 31.
     
  • Lu, X. L., and Rubart, M. (2014) Micron-scale voltage and [Ca(2+)]i imaging in the intact heart, Front Physiol. 5:451., 10.3389/fphys.2014.00451. eCollection 02014. 
     
  • Masuoka, H. C., Vuppalanchi, R., Deppe, R., Bybee, P., Comerford, M., Liangpunsakul, S., Ghabril, M., and Chalasani, N. (2015) Individuals with Primary Sclerosing Cholangitis Have Elevated Levels of Biomarkers for Apoptosis but Not Necrosis, Dig Dis Sci 21, 21. 
     
  • Micanovic, R., Chitteti, B. R., Dagher, P. C., Srour, E. F., Khan, S., Hato, T., Lyle, A., Tong, Y., Wu, X. R., and El-Achkar, T. M. (2015) Tamm-Horsfall Protein Regulates Granulopoiesis and Systemic Neutrophil Homeostasis, J Am Soc Nephrol 2, 2014070664. 
     
  • Micanovic, R., Khan, S., and El-Achkar, T. M. (2015) Immunofluorescence laser micro-dissection of specific nephron segments in the mouse kidney allows targeted downstream proteomic analysis, Physiol Rep. 3(2). e12306. doi: 12310.14814/phy12302.12306. Print 12015 Feb 12301. 
     
  • Mitter, S. K., Song, C., Qi, X., Mao, H., Rao, H., Akin, D., Lewin, A., Grant, M., Dunn, W., Jr., Ding, J., Bowes Rickman, C., and Boulton, M. (2014) Dysregulated autophagy in the RPE is associated with increased susceptibility to oxidative stress and AMD, Autophagy 10, 1989-2005. doi: 1910.4161/auto.36184.
     
  • Ohlemacher, S. K., Iglesias, C. L., Sridhar, A., Gamm, D. M., and Meyer, J. S. (2015) Generation of highly enriched populations of optic vesicle-like retinal cells from human pluripotent stem cells, Curr Protoc Stem Cell Biol. 32:1H.8.1-1H.8.20., 10.1002/9780470151808.sc9780470151801h9780470151808s9780470151832.
     
  • Prasain, N., Lee, M. R., Vemula, S., Meador, J. L., Yoshimoto, M., Ferkowicz, M. J., Fett, A., Gupta, M., Rapp, B. M., Saadatzadeh, M. R., Ginsberg, M., Elemento, O., Lee, Y., Voytik-Harbin, S. L., Chung, H. M., Hong, K. S., Reid, E., O'Neill, C. L., Medina, R. J., Stitt, A. W., Murphy, M. P., Rafii, S., Broxmeyer, H. E., and Yoder, M. C. (2014) Differentiation of human pluripotent stem cells to cells similar to cord-blood endothelial colony-forming cells, Nat Biotechnol. 32, 1151-1157. doi: 1110.1038/nbt.3048. Epub 2014 Oct 1112.
     
  • Ryan, J. C., Dunn, K. W., and Decker, B. S. (2014) Effects of chronic kidney disease on liver transport: quantitative intravital microscopy of fluorescein transport in the rat liver, Am J Physiol Regul Integr Comp Physiol. 307, R1488-1492. doi: 1410.1152/ajpregu.00371.02014. Epub 02014 Oct 00322.
     
  • Sandoval, R. M., Wang, E., and Molitoris, B. A. (2014) Finding the bottom and using it: Offsets and sensitivity in the detection of low intensity values in vivo with 2-photon microscopy, Intravital. 2(1). e23674.
     
  • Sulaiman, R. S., Quigley, J., Qi, X., O'Hare, M. N., Grant, M. B., Boulton, M. E., and Corson, T. W. (2015) A Simple Optical Coherence Tomography Quantification Method for Choroidal Neovascularization, J Ocul Pharmacol Ther 10, 10.
     
  • Tunduguru, R., Chiu, T. T., Ramalingam, L., Elmendorf, J. S., Klip, A., and Thurmond, D. C. (2014) Signaling of the p21-activated kinase (PAK1) coordinates insulin-stimulated actin remodeling and glucose uptake in skeletal muscle cells, Biochem Pharmacol. 92, 380-388. doi: 310.1016/j.bcp.2014.1008.1033. Epub 2014 Sep 1016. 
     
  • Verma, S. K., and Molitoris, B. A. (2015) Renal endothelial injury and microvascular dysfunction in acute kidney injury, Semin Nephrol. 35, 96-107. doi: 110.1016/j.semnephrol.2015.1001.1010.
     
  • Wagner, M. C., Campos-Bilderback, S. B., Chowdhury, M., Flores, B., Lai, X., Myslinski, J., Pandit, S., Sandoval, R. M., Wean, S. E., Wei, Y., Satlin, L. M., Wiggins, R. C., Witzmann, F. A., and Molitoris, B. A. (2015) Proximal Tubules Have the Capacity to Regulate Uptake of Albumin, J Am Soc Nephrol 8, 2014111107.
     
  • Wang, L., Khambu, B., Zhang, H., and Yin, X. M. (2015) Autophagy in alcoholic liver disease, selfeating triggered by drinking, Clin Res Hepatol Gastroenterol 14, 00144-00148.
     
  • Wang, L., Zhang, H., Rodriguez, S., Cao, L., Parish, J., Mumaw, C., Zollman, A., Kamoka, M. M., Mu, J., Chen, D. Z., Srour, E. F., Chitteti, B. R., HogenEsch, H., Tu, X., Bellido, T. M., Boswell, H. S., Manshouri, T., Verstovsek, S., Yoder, M. C., Kapur, R., Cardoso, A. A., and Carlesso, N. (2014) Notch-dependent repression of miR-155 in the bone marrow niche regulates hematopoiesis in an NF-kappaB-dependent manner, Cell Stem Cell. 15, 51-65. doi: 10.1016/j.stem.2014.1004.1021.
     
  • Wang, L., Zoetemelk, M., Chitteti, B. R., Ratliff, T. L., Myers, J. D., Srour, E. F., Broxmeyer, H., and Jerde, T. J. (2015) Expansion of prostate epithelial progenitor cells after inflammation of the mouse prostate, Am J Physiol Renal Physiol. 308, F1421-1430. doi: 1410.1152/ajprenal.00488.02014. Epub 02015 Apr 00429. 
     
  • Wang, T., Green, L. A., Gupta, S. K., Amet, T., Byrd, D. J., Yu, Q., Twigg, H. L., 3rd, and Clauss, M. (2015) Intracellular Nef detected in peripheral blood mononuclear cells from HIV patients, AIDS Res Hum Retroviruses. 31, 217-220. doi: 210.1089/AID.2013.0250. Epub 2014 Sep 1084.
     
  • Wei, Q., Zhang, F., Richardson, M. M., Roy, N. H., Rodgers, W., Liu, Y., Zhao, W., Fu, C., Ding, Y., Huang, C., Chen, Y., Sun, Y., Ding, L., Hu, Y., Ma, J. X., Boulton, M. E., Pasula, S., Wren, J. D., Tanaka, S., Huang, X., Thali, M., Hammerling, G. J., and Zhang, X. A. (2014) CD82 restrains pathological angiogenesis by altering lipid raft clustering and CD44 trafficking in endothelial cells, Circulation. 130, 1493-1504. doi: 1410.1161/CIRCULATIONAHA.1114.011096. Epub 012014 Aug 011022.
     
  • Yang, K., Lan, J., Shepherd, N., Hu, N., Xing, Y., Byrd, D., Amet, T., Jewell, C., Gupta, S., Kounga, C., Gao, J., and Yu, Q. (2015) Blockage of CD59 Function Restores Activities of Neutralizing and Nonneutralizing Antibodies in Triggering Antibody-Dependent Complement-Mediated Lysis of HIV-1 Virions and Provirus-Activated Latently Infected Cells, J Virol. 89, 9393-9406. doi: 9310.1128/JVI.01614-01615. Epub 02015 Jul 01611.
     
  • Yang, T., Rubart, M., Soonpaa, M. H., Didie, M., Christalla, P., Zimmermann, W. H., and Field, L. J. (2015) Cardiac engraftment of genetically-selected parthenogenetic stem cell-derived cardiomyocytes, PLoS One. 10, e0131511. doi: 0131510.0131371/journal.pone.0131511. eCollection 0132015.
     
  • Yoshida, M., Hata, K., Takashima, R., Ono, K., Nakamura, E., Takahata, Y., Murakami, T., Iseki, S., Takano-Yamamoto, T., Nishimura, R., and Yoneda, T. (2015) The transcription factor Foxc1 is necessary for Ihh-Gli2-regulated endochondral ossification, Nat Commun. 6:6653., 10.1038/ncomms7653.

2013

  • Plowman, E. K., Bijangi-Vishehsaraei, K., Halum, S., Cates, D., Hanenberg, H., Domer, A. S., Nolta, J. A., and Belafsky, P. C. (2013) Autologous myoblasts attenuate atrophy and improve tongue force in a denervated tongue model: A pilot study, The Laryngoscope.
  • Soonpaa, M. H., Rubart, M., and Field, L. J. (2013) Challenges measuring cardiomyocyte renewal, Biochimica et biophysica acta 1833, 799-803.
  • Tell, G., Di Piazza, M., Kamocka, M. M., and Vascotto, C. (2013) Combining RNAi and in vivo confocal microscopy analysis of the photoconvertible fluorescent protein Dendra2 to study a DNA repair protein, BioTechniques 55, 198-203.
  • Chen, Y., Ozturk, N. C., and Zhou, F. C. (2013) DNA methylation program in developing hippocampus and its alteration by alcohol, PloS one 8, e60503.
  • Koehler, K. R., Mikosz, A. M., Molosh, A. I., Patel, D., and Hashino, E. (2013) Generation of inner ear sensory epithelia from pluripotent stem cells in 3D culture, Nature 500, 217-221.
  • Chang, P. C., Turker, I., Lopshire, J. C., Masroor, S., Nguyen, B. L., Tao, W., Rubart, M., Chen, P. S., Chen, Z., and Ai, T. (2013) Heterogeneous upregulation of apamin-sensitive potassium currents in failing human ventricles, Journal of the American Heart Association 2, e004713.
  • Clendenon, S. G., Ward, H. H., Dunn, K. W., and Bacallao, R. (2013) High resolution 4-dimension imaging of metanephric embryonic kidney morphogenesis, Kidney international 83, 757-761.
  • Hall, A. M., Rhodes, G. J., Sandoval, R. M., Corridon, P. R., and Molitoris, B. A. (2013) In vivo multiphoton imaging of mitochondrial structure and function during acute kidney injury, Kidney international 83, 72-83.
  • Werner, M. E., Ward, H. H., Phillips, C. L., Miller, C., Gattone, V. H., and Bacallao, R. L. (2013) Inversin modulates the cortical actin network during mitosis, American journal of physiology. Cell physiology 305, C36-47.
  • Molitoris, B. A. (2013) Measuring glomerular filtration rate in the intensive care unit: no substitutes please, Critical care (London, England) 17, 181.
  • VanDuyn, N., Settivari, R., LeVora, J., Zhou, S., Unrine, J., and Nass, R. (2013) The metal transporter SMF-3/DMT-1 mediates aluminum-induced dopamine neuron degeneration, Journal of neurochemistry 124, 147-157.
  • Corridon, P. R., Rhodes, G. J., Leonard, E. C., Basile, D. P., Gattone, V. H., 2nd, Bacallao, R. L., and Atkinson, S. J. (2013) A method to facilitate and monitor expression of exogenous genes in the rat kidney using plasmid and viral vectors, American journal of physiology. Renal physiology 304, F1217-1229.
  • Rudgalvyte, M., VanDuyn, N., Aarnio, V., Heikkinen, L., Peltonen, J., Lakso, M., Nass, R., and Wong, G. (2013) Methylmercury exposure increases lipocalin related (lpr) and decreases activated in blocked unfolded protein response (abu) genes and specific miRNAs in Caenorhabditis elegans, Toxicology letters 222, 189-196.
  • Settivari, R., VanDuyn, N., LeVora, J., and Nass, R. (2013) The Nrf2/SKN-1-dependent glutathione S-transferase pi homologue GST-1 inhibits dopamine neuron degeneration in a Caenorhabditis elegans model of manganism, Neurotoxicology 38, 51-60.
  • Kalwat, M. A., Yoder, S. M., Wang, Z., and Thurmond, D. C. (2013) A p21-activated kinase (PAK1) signaling cascade coordinately regulates F-actin remodeling and insulin granule exocytosis in pancreatic beta cells, Biochemical pharmacology 85, 808-816.
  • Sutton, T. A., Hato, T., Mai, E., Yoshimoto, M., Kuehl, S., Anderson, M., Mang, H., Plotkin, Z., Chan, R. J., and Dagher, P. C. (2013) p53 is renoprotective after ischemic kidney injury by reducing inflammation, Journal of the American Society of Nephrology : JASN 24, 113-124.
  • Didie, M., Christalla, P., Rubart, M., Muppala, V., Doker, S., Unsold, B., El-Armouche, A., Rau, T., Eschenhagen, T., Schwoerer, A. P., Ehmke, H., Schumacher, U., Fuchs, S., Lange, C., Becker, A., Tao, W., Scherschel, J. A., Soonpaa, M. H., Yang, T., Lin, Q., Zenke, M., Han, D. W., Scholer, H. R., Rudolph, C., Steinemann, D., Schlegelberger, B., Kattman, S., Witty, A., Keller, G., Field, L. J., and Zimmermann, W. H. (2013) Parthenogenetic stem cells for tissue-engineered heart repair, The Journal of clinical investigation 123, 1285-1298.
  • Byrd, D., Amet, T., Hu, N., Lan, J., Hu, S., and Yu, Q. (2013) Primary human leukocyte subsets differentially express vaccinia virus receptors enriched in lipid rafts, Journal of virology 87, 9301-9312.
  • Sandoval, R. M., and Molitoris, B. A. (2013) Quantifying glomerular permeability of fluorescent macromolecules using 2-photon microscopy in Munich Wistar rats, Journal of visualized experiments : JoVE.
  • Hato, T., El-Achkar, T. M., and Dagher, P. C. (2013) Sisters in arms: myeloid and tubular epithelial cells shape renal innate immunity, American journal of physiology. Renal physiology 304, F1243-1251.
  • Lee, J. H., Hong, K. S., Mantel, C., Broxmeyer, H. E., Lee, M. R., and Kim, K. S. (2013) Spontaneously differentiated GATA6-positive human embryonic stem cells represent an important cellular step in human embryonic development; they are not just an artifact of in vitro culture, Stem cells and development 22, 2706-2713.
  • McDonald, J. H., and Dunn, K. W. (2013) Statistical tests for measures of colocalization in biological microscopy, Journal of microscopy.
  • El-Achkar, T. M., McCracken, R., Liu, Y., Heitmeier, M. R., Bourgeois, S., Ryerse, J., and Wu, X. R. (2013) Tamm-Horsfall protein translocates to the basolateral domain of thick ascending limbs, interstitium, and circulation during recovery from acute kidney injury, American journal of physiology. Renal physiology 304, F1066-1075.
  • Herbert, B. S., Grimes, B. R., Xu, W. M., Werner, M., Ward, C., Rossetti, S., Harris, P., Bello-Reuss, E., Ward, H. H., Miller, C., Gattone, V. H., 2nd, Phillips, C. L., Wandinger-Ness, A., and Bacallao, R. L. (2013) A telomerase immortalized human proximal tubule cell line with a truncation mutation (Q4004X) in polycystin-1, PloS one 8, e55191.

2012

  • Choong, F. X., Sandoval, R. M., Molitoris, B. A., and Richter-Dahlfors, A. (2012) Multiphoton microscopy applied for real-time intravital imaging of bacterial infections in vivo, Methods Enzymol 506, 35-61.

  • Clendenon, S. G., Sarmah, S., Shah, B., Liu, Q., and Marrs, J. A. (2012) Zebrafish cadherin-11 participates in retinal differentiation and retinotectal axon projection during visual system development, Dev Dyn 241, 442-454.

  • Dagher, P. C., Mai, E. M., Hato, T., Lee, S. Y., Anderson, M. D., Karozos, S. C., Mang, H. E., Knipe, N. L., Plotkin, Z., and Sutton, T. A. (2012) The p53 inhibitor pifithrin-alpha can stimulate fibrosis in a rat model of ischemic acute kidney injury, Am J Physiol Renal Physiol 302, F284-291.

  • Kalwat, M. A., Wiseman, D. A., Luo, W., Wang, Z., and Thurmond, D. C. (2012) Gelsolin associates with the N terminus of syntaxin 4 to regulate insulin granule exocytosis, Mol Endocrinol 26, 128-141.

  • Lahm, T., Albrecht, M., Fisher, A. J., Selej, M., Patel, N. G., Brown, J. A., Justice, M. J., Brown, M. B., Van Demark, M., Trulock, K. M., Dieudonne, D., Reddy, J. G., Presson, R. G., and Petrache, I. (2012) 17-Beta Estradiol Attenuates Hypoxic Pulmonary Hypertension via Estrogen Receptor-mediated Effects, Am J Respir Crit Care Med.

  • Sandoval, R. M., Wagner, M. C., Patel, M., Campos-Bilderback, S. B., Rhodes, G. J., Wang, E., Wean, S. E., Clendenon, S. S., and Molitoris, B. A. (2012) Multiple factors influence glomerular albumin permeability in rats, J Am Soc Nephrol 23, 447-457.

  • Wang, E., Meier, D. J., Sandoval, R. M., Von Hendy-Willson, V. E., Pressler, B. M., Bunch, R. M., Alloosh, M., Sturek, M. S., Schwartz, G. J., and Molitoris, B. A. (2012) A portable fiberoptic ratiometric fluorescence analyzer provides rapid point-of-care determination of glomerular filtration rate in large animals, Kidney Int 81, 112-117.

  • Xu, Z., Kim, O., Kamocka, M., Rosen, E. D., and Alber, M. (2012) Multiscale models of thrombogenesis, Wiley Interdiscip Rev Syst Biol Med.

  • Basile, D. P., Zeng, P., Friedrich, J. L., Leonard, E. C., and Yoder, M. C. (2012) Low proliferative potential and impaired angiogenesis of cultured rat kidney endothelial cells, Microcirculation.

  • Benson, H. L., Suzuki, H., Lott, J., Fisher, A. J., Walline, C., Heidler, K. M., Brutkiewicz, R., Blum, J. S., and Wilkes, D. S. (2012) Donor lung derived myeloid and plasmacytoid dendritic cells differentially regulate T cell proliferation and cytokine production, Respir Res 13, 25.

  • Broxmeyer, H. E., Christopherson, K., Hangoc, G., Cooper, S., Mantel, C., Renukaradhya, G. J., and Brutkiewicz, R. R. (2012) CD1d expression on and regulation of murine hematopoietic stem and progenitor cells, Blood 119, 5731-5741.

  • Gallo, R. M., Khan, M. A., Shi, J., Kapur, R., Wei, L., Bailey, J. C., Liu, J., and Brutkiewicz, R. R. (2012) Regulation of the Actin Cytoskeleton by Rho Kinase Controls Antigen Presentation by CD1d, J Immunol.

  • Green, L. A., Kim, C., Gupta, S. K., Rajashekhar, G., Rehman, J., and Clauss, M. (2012) Pentoxifylline Reduces Tumor Necrosis Factor-alpha and HIV-Induced Vascular Endothelial Activation, AIDS Res Hum Retroviruses.

  • Habegger, K. M., Penque, B. A., Sealls, W., Tackett, L., Bell, L. N., Blue, E. K., Gallagher, P. J., Sturek, M., Alloosh, M. A., Steinberg, H. O., Considine, R. V., and Elmendorf, J. S. (2012) Fat-induced membrane cholesterol accrual provokes cortical filamentous actin destabilisation and glucose transport dysfunction in skeletal muscle, Diabetologia 55, 457-467.

  • Halum, S. L., McRae, B., Bijangi-Vishehsaraei, K., and Hiatt, K. (2012) Neurotrophic factor-secreting autologous muscle stem cell therapy for the treatment of laryngeal denervation injury, Laryngoscope.

  • Huang, R., Li, M., and Gregory, R. L. (2012) Effect of nicotine on growth and metabolism of Streptococcus mutans, Eur J Oral Sci 120, 319-325.

  • Imamura, R., Isaka, Y., Sandoval, R. M., Ichimaru, N., Abe, T., Okumi, M., Yazawa, K., Kitamura, H., Kaimori, J., Nonomura, N., Rakugi, H., Molitoris, B. A., and Takahara, S. (2012) A nonerythropoietic derivative of erythropoietin inhibits tubulointerstitial fibrosis in remnant kidney, Clin Exp Nephrol.

  • K Sharma, A., Lu, G., Jester, A., Saadatzadeh, M. R., Laubach, V. E., Murphy, M. P., Ailawadi, G., and Upchurch, G. R. J. (2012) Mesenchymal Stem Cells Attenuate Experimental Abdominal Aortic Aneurysm Formation via Inhibition of IL-17, Circulation (accepted, June 2012).

  • Layton, A. T., Dantzler, W. H., and Pannabecker, T. L. (2012) Urine concentrating mechanism: impact of vascular and tubular architecture and a proposed descending limb urea-Na+ cotransporter, Am J Physiol Renal Physiol 302, F591-605.

  • Layton, A. T., Gilbert, R. L., and Pannabecker, T. L. (2012) Isolated interstitial nodal spaces may facilitate preferential solute and fluid mixing in the rat renal inner medulla, Am J Physiol Renal Physiol 302, F830-839.

  • Li, M., Huang, R., Zhou, X., and Gregory, R. L. (2012) Effect of nicotine on competition and coexistence between Streptococcus sanguimis in in vitrobiofilms, Arch. Oral Biology (in press).

  • McRae, B. R., Shew, M., Aaron, G. P., Bijangi-Vishehsaraei, K., and Halum, S. L. (2012) A rapid, novel model of culturing cranial nerve X-derived motoneurons for screening trophic factor outgrowth response, Neurol Res 34, 564-575.

  • Moberly, S. P., Berwick, Z. C., Kohr, M., Svendsen, M., Mather, K. J., and Tune, J. D. (2012) Intracoronary glucagon-like peptide 1 preferentially augments glucose uptake in ischemic myocardium independent of changes in coronary flow, Exp Biol Med (Maywood) 237, 334-342.

  • Nassar, H. M., Li, M., and Gregory, R. L. (2012) Effect of honey on Streptococcus mutans growth and biofilm formation, Appl Environ Microbiol 78, 536-540.

  • Pannabecker, T. (2012) Renal Structure and Function of Desert Rodents, National Science Foundation IOS-0952885.

  • Pannabecker, T. (2012) Integrated Tubular and Vascular Structure and Function in Renal Inner Medulla, NIH/NIDDK 1 R01 DK083338-01A2.

  • Payne, R. M., and Peverill, R. E. (2012) Cardiomyopathy of Friedreich's Ataxia (FRDA), Ir J Med Sci.

  • Payne, R. M., and Wagner, G. R. (2012) Cardiomyopathy in Friedreich Ataxia: Clinical Findings and Research, J Child Neurol.

  • Rajashekhar, G., Gupta, A., Marin, A., Friedrich, J., Willuweit, A., Berg, D. T., Cramer, M. S., Sandusky, G. E., Sutton, T. A., Basile, D. P., Grinnell, B. W., and Clauss, M. (2012) Soluble thrombomodulin reduces inflammation and prevents microalbuminuria induced by chronic endothelial activation in transgenic mice, Am J Physiol Renal Physiol 302, F703-712.

  • Saleh, M. A., Sandoval, R. M., Rhodes, G. J., Campos-Bilderback, S. B., Molitoris, B. A., and Pollock, D. M. (2012) Chronic endothelin-1 infusion elevates glomerular sieving coefficient and proximal tubular albumin reuptake in the rat, Life Sci.

  • Tao, W., Soonpaa, M. H., Field, L. J., Chen, P. S., Firulli, A. B., Shou, W., and Rubart, M. (2012) Functional screening of intracardiac cell transplants using two-photon fluorescence microscopy, Pediatr Cardiol 33, 929-937.

  • Tolar, J., Becker, P. S., Clapp, D. W., Hanenberg, H., de Heredia, C. D., Kiem, H. P., Navarro, S., Qasba, P., Rio, P., Schmidt, M., Sevilla, J., Verhoeyen, E., Thrasher, A. J., and Bueren, J. (2012) Gene therapy for fanconi anemia: one step closer to the clinic, Hum Gene Ther 23, 141-144.

  • Turek, J., Ebetino, F. H., Lundy, M. W., Sun, S., Kashemirov, B. A., McKenna, C. E., Gallant, M. A., Plotkin, L. I., Bellido, T., Duan, X., Triffitt, J. T., Russell, R. G., Burr, D. B., and Allen, M. R. (2012) Bisphosphonate binding affinity affects drug distribution in both intracortical and trabecular bone of rabbits, Calcif Tissue Int 90, 202-210.

  • Urity, V. B., Issaian, T., Braun, E. J., Dantzler, W. H., and Pannabecker, T. L. (2012) Architecture of kangaroo rat inner medulla: segmentation of descending thin limb of Henle's loop, Am J Physiol Regul Integr Comp Physiol 302, R720-726.

  • Vyas, P. M., Tomamichel, W. J., Pride, P. M., Babbey, C. M., Wang, Q., Mercier, J., Martin, E. M., and Payne, R. M. (2012) A TAT-frataxin fusion protein increases lifespan and cardiac function in a conditional Friedreich's ataxia mouse model, Hum Mol Genet 21, 1230-1247.

  • Wagner, G. R., Pride, P. M., Babbey, C. M., and Payne, R. M. (2012) Friedreich's ataxia reveals a mechanism for coordinate regulation of oxidative metabolism via feedback inhibition of the SIRT3 deacetylase, Hum Mol Genet 21, 2688-2697.

  • Weng, Y., Howard, L., Chong, V. J., Sun, J., Gregory, R. L., and Xie, D. (2012) A novel furanone-modified antibacterial dental glass ionomer cement, Acta Biomater 8, 3153-3160.

  • Weng, Y., Howard, L., Guo, X., Chong, V. J., Gregory, R. L., and Xie, D. (2012) A novel antibacterial resin composite for improved dental restoratives, J Mater Sci Mater Med 23, 1553-1561.

  • Yang, J. J., Kularatne, S. A., Chen, X., Low, P. S., and Wang, E. (2012) Characterization of in vivo disulfide-reduction mediated drug release in mouse kidneys, Mol Pharm 9, 310-317.

  • Zhou, Y., Holmseth, S., Hua, R., Lehre, A. C., Olofsson, A. M., Poblete-Naredo, I., Kempson, S. A., and Danbolt, N. C. (2012) The betaine-GABA transporter (BGT1, slc6a12) is predominantly expressed in the liver and at lower levels in the kidneys and at the brain surface, Am J Physiol Renal Physiol 302, F316-328.

  • Basavarajappa, H. D., and Corson, T. W. (2012) KIF14 as an oncogene in retinoblastoma: a target for novel therapeutics?, Future Med Chem 4, 2149-2152.

  • Basile, D. P., Zeng, P., Friedrich, J. L., Leonard, E. C., and Yoder, M. C. (2012) Low proliferative potential and impaired angiogenesis of cultured rat kidney endothelial cells, Microcirculation 19, 598-609.

  • Broxmeyer, H. E. (2012) Enhancing engraftment of cord blood cells via insight into the biology of stem/progenitor cell function, Ann N Y Acad Sci 1266, 151-160.

  • Broxmeyer, H. E., Etienne-Julan, M., Gotoh, A., Braun, S. E., Lu, L., Cooper, S., Feng, G. S., Li, X. J., and Chan, R. J. (2012) Hematopoietic Colony Formation from Human Growth Factor-Dependent TF1 Cells and Human Cord Blood Myeloid Progenitor Cells Depends on SHP2 Phosphatase Function, Stem Cells Dev.

  • Broxmeyer, H. E., Hoggatt, J., O'Leary, H. A., Mantel, C., Chitteti, B. R., Cooper, S., Messina-Graham, S., Hangoc, G., Farag, S., Rohrabaugh, S. L., Ou, X., Speth, J., Pelus, L. M., Srour, E. F., and Campbell, T. B. (2012) Dipeptidylpeptidase 4 negatively regulates colony-stimulating factor activity and stress hematopoiesis, Nat Med 18, 1786-1796.

  • Casbon, A. J., Long, M. E., Dunn, K. W., Allen, L. A., and Dinauer, M. C. (2012) Effects of IFN-gamma on intracellular trafficking and activity of macrophage NADPH oxidase flavocytochrome b558, J Leukoc Biol 92, 869-882.

  • Chen, P. S., Ogawa, M., Maruyama, M., Chua, S. K., Chang, P. C., Rubart-von der Lohe, M., Chen, Z., Ai, T., and Lin, S. F. (2012) Imaging arrhythmogenic calcium signaling in intact hearts, Pediatr Cardiol 33, 968-974.

  • Choi, M. R., Bardhan, R., Stanton-Maxey, K. J., Badve, S., Nakshatri, H., Stantz, K. M., Cao, N., Halas, N. J., and Clare, S. E. (2012) Delivery of nanoparticles to brain metastases of breast cancer using a cellular Trojan horse, Cancer Nanotechnol 3, 47-54.

  • Crotzer, V. L., Matute, J. D., Arias, A. A., Zhao, H., Quilliam, L. A., Dinauer, M. C., and Blum, J. S. (2012) Cutting edge: NADPH oxidase modulates MHC class II antigen presentation by B cells, J Immunol 189, 3800-3804.

  • Dunn, K. W., Sutton, T. A., and Sandoval, R. M. (2012) Live-animal imaging of renal function by multiphoton microscopy, Curr Protoc Cytom Chapter 14, Unit12 19.

  • Gallo, R. M., Khan, M. A., Shi, J., Kapur, R., Wei, L., Bailey, J. C., Liu, J., and Brutkiewicz, R. R. (2012) Regulation of the actin cytoskeleton by Rho kinase controls antigen presentation by CD1d, J Immunol 189, 1689-1698.

  • Green, L. A., Kim, C., Gupta, S. K., Rajashekhar, G., Rehman, J., and Clauss, M. (2012) Pentoxifylline reduces tumor necrosis factor-alpha and HIV-induced vascular endothelial activation, AIDS Res Hum Retroviruses 28, 1207-1215.

  • Green, L. A., Petrusca, D., Rajashekhar, G., Gianaris, T., Schweitzer, K. S., Wang, L., Justice, M. J., Petrache, I., and Clauss, M. (2012) Cigarette Smoke-Induced CXCR3 Receptor Up-Regulation Mediates Endothelial Apoptosis, Am J Respir Cell Mol Biol 47, 807-814.

  • Hall, A. M., Rhodes, G. J., Sandoval, R. M., Corridon, P. R., and Molitoris, B. A. (2012) In vivo multiphoton imaging of mitochondrial structure and function during acute kidney injury, Kidney Int.

  • Halum, S. L., McRae, B., Bijangi-Vishehsaraei, K., and Hiatt, K. (2012) Neurotrophic factor-secreting autologous muscle stem cell therapy for the treatment of laryngeal denervation injury, Laryngoscope 122, 2482-2496.

  • Hiatt, K., Lewis, D., Shew, M., Bijangi-Vishehsaraei, K., and Halum, S. (2012) Ciliary neurotrophic factor (CNTF) promotes skeletal muscle progenitor cell (MPC) viability via the phosphatidylinositol 3-kinase-Akt pathway, J Tissue Eng Regen Med.

  • Huda, N., Abe, S., Gu, L., Mendonca, M. S., Mohanty, S., and Gilley, D. (2012) Recruitment of TRF2 to laser-induced DNA damage sites, Free Radic Biol Med 53, 1192-1197.

  • Kanakasabai, S., Pestereva, E., Chearwae, W., Gupta, S. K., Ansari, S., and Bright, J. J. (2012) PPARgamma Agonists Promote Oligodendrocyte Differentiation of Neural Stem Cells by Modulating Stemness and Differentiation Genes, PLoS One 7, e50500.

  • Kelly, K. J., Zhang, J., Wang, M., Zhang, S., and Dominguez, J. H. (2012) Intravenous renal cell transplantation for rats with acute and chronic renal failure, Am J Physiol Renal Physiol 303, F357-365.

  • Liu, F., and Korc, M. (2012) Cdk4/6 inhibition induces epithelial-mesenchymal transition and enhances invasiveness in pancreatic cancer cells, Mol Cancer Ther 11, 2138-2148.

  • Mali, R. S., Ma, P., Zeng, L. F., Martin, H., Ramdas, B., He, Y., Sims, E., Nabinger, S., Ghosh, J., Sharma, N., Munugalavadla, V., Chatterjee, A., Li, S., Sandusky, G., Craig, A. W., Bunting, K. D., Feng, G. S., Chan, R. J., Zhang, Z. Y., and Kapur, R. (2012) Role of SHP2 phosphatase in KIT-induced transformation: identification of SHP2 as a druggable target in diseases involving oncogenic KIT, Blood 120, 2669-2678.

  • Oh, E., Kalwat, M. A., Kim, M. J., Verhage, M., and Thurmond, D. C. (2012) Munc18-1 regulates first-phase insulin release by promoting granule docking to multiple syntaxin isoforms, J Biol Chem 287, 25821-25833.

  • Rinker, S. D., Gu, X., Fortney, K. R., Zwickl, B. W., Katz, B. P., Janowicz, D. M., Spinola, S. M., and Bauer, M. E. (2012) Permeases of the sap transporter are required for cathelicidin resistance and virulence of Haemophilus ducreyi in humans, J Infect Dis 206, 1407-1414.

  • Sawant, D. V., Sehra, S., Nguyen, E. T., Jadhav, R., Englert, K., Shinnakasu, R., Hangoc, G., Broxmeyer, H. E., Nakayama, T., Perumal, N. B., Kaplan, M. H., and Dent, A. L. (2012) Bcl6 controls the th2 inflammatory activity of regulatory T cells by repressing gata3 function, J Immunol 189, 4759-4769.

  • Soonpaa, M. H., Rubart, M., and Field, L. J. (2012) Challenges measuring cardiomyocyte renewal, Biochim Biophys Acta.

  • Sutton, T. A., Hato, T., Mai, E., Yoshimoto, M., Kuehl, S., Anderson, M., Mang, H., Plotkin, Z., Chan, R. J., and Dagher, P. C. (2012) p53 Is Renoprotective after Ischemic Kidney Injury by Reducing Inflammation, J Am Soc Nephrol.

  • Tanaka, H., Abe, S., Huda, N., Tu, L., Beam, M. J., Grimes, B., and Gilley, D. (2012) Telomere fusions in early human breast carcinoma, Proc Natl Acad Sci U S A 109, 14098-14103.

  • Tao, W., Shi, J., Dorn, G. W., 2nd, Wei, L., and Rubart, M. (2012) Spatial variability in T-tubule and electrical remodeling of left ventricular epicardium in mouse hearts with transgenic Galphaq overexpression-induced pathological hypertrophy, J Mol Cell Cardiol 53, 409-419.

  • Vincentz, J. W., Rubart, M., and Firulli, A. B. (2012) Ontogeny of cardiac sympathetic innervation and its implications for cardiac disease, Pediatr Cardiol 33, 923-928.

  • Vistbakka, J., Vanduyn, N., Wong, G., and Nass, R. (2012) C. elegansas a Genetic Model System to Identify Parkinson's Disease-associated Therapeutic Targets, CNS Neurol Disord Drug Targets.

  • Xi, Y., Ai, T., De Lange, E., Li, Z., Wu, G., Brunelli, L., Kyle, W. B., Turker, I., Cheng, J., Ackerman, M. J., Kimura, A., Weiss, J. N., Qu, Z., Kim, J. J., Faulkner, G., and Vatta, M. (2012) Loss of function of hNav1.5 by a ZASP1 mutation associated with intraventricular conduction disturbances in left ventricular noncompaction, Circ Arrhythm Electrophysiol 5, 1017-1026.

  • Xu, Z., Christley, S., Lioi, J., Kim, O., Harvey, C., Sun, W., Rosen, E. D., and Alber, M. (2012) Multiscale model of fibrin accumulation on the blood clot surface and platelet dynamics, Methods Cell Biol 110, 367-388.

  • Zhang, W., Huang, Y., and Gunst, S. J. (2012) The small GTPase RhoA regulates the contraction of smooth muscle tissues by catalyzing the assembly of cytoskeletal signaling complexes at membrane adhesion sites, J Biol Chem 287, 33996-34008.

2011

  • Bailey, J. A., Maloney, B., Ge, Y. W., and Lahiri, D. K. (2011) Functional activity of the novel Alzheimer's amyloid beta-peptide interacting domain (AbetaID) in the APP and BACE1 promoter sequences and implications in activating apoptotic genes and in amyloidogenesis, Gene 488, 13-22.

  • Basile, D. P., Friedrich, J. L., Spahic, J., Knipe, N., Mang, H., Leonard, E. C., Changizi-Ashtiyani, S., Bacallao, R. L., Molitoris, B. A., and Sutton, T. A. (2011) Impaired endothelial proliferation and mesenchymal transition contribute to vascular rarefaction following acute kidney injury, Am J Physiol Renal Physiol 300, F721-733.

  • Basile, D. P., Zeng, P., Friedrich, J. L., Leonard, E. C., and Yoder, M. C. (2011) Low proliferative potential and anti angiogenic properties of cultured rat kidney endothelial cells, Angiogenesis - submitted

  • Basile, D. P., Zeng, P., Friedrich, J. L., and Yoder, M. C. (2011) Paradoxical pro-growth gene expression patterns in rat kidney endothelial cells characterized by limited growth potential J Am Soc Nephrol -Abstracts PO-2827, 2011.

  • Bergan, T. N., and Blount, M. A. (2011) Chronic use of Chloroquine Disrupts the Urine Concentration Mechanism by Lowering cAMP Levels in the Inner Medulla, AJP-Renal – in review.

  • Broxmeyer, H. E., Lee, M. R., Hangoc, G., Cooper, S., Prasain, N., Kim, Y. J., Mallett, C., Ye, Z., Witting, S., Cornetta, K., Cheng, L., and Yoder, M. C. (2011) Hematopoietic stem/progenitor cells, generation of induced pluripotent stem cells, and isolation of endothelial progenitors from 21- to 23.5-year cryopreserved cord blood, Blood 117, 4773-4777.

  • Camirand, G., Li, Q., Demetris, A. J., Watkins, S. C., Shlomchik, W. D., Rothstein, D. M., and Lakkis, F. G. (2011) Multiphoton intravital microscopy of the transplanted mouse kidney, Am J Transplant 11, 2067-2074.

  • Camirand, G., Li, Q., Demetris, A. J., Watkins, S. C., Shlomchik, W. D., Rothstein, D. M., and Lakkis, F. G. (2011) Multiphoton intravital imaging of the transplanted mouse kidney, Am J Transplant 11, 2067-2074.

  • Chae, H. D., Lee, M. R., and Broxmeyer, H. E. (2011) AICAR Induces G1/S Arrest and Nanog Down-Regulation via p53 and Enhances Erythroid Differentiation, Stem Cells.

  • Chen, N. X., Moe, S. M., Eggleston-Gulyas, T., Chen, X., Hoffmeyer, W. D., Bacallao, R. L., Herbert, B. S., and Gattone, V. H., 2nd. (2011) Calcimimetics inhibit renal pathology in rodent nephronophthisis, Kidney Int 80, 612-619.

  • Clauss, M., Voswinckel, R., Rajashekhar, G., Sigua, N. L., Fehrenbach, H., Rush, N. I., Schweitzer, K. S., Yildirim, A. O., Kamocki, K., Fisher, A. J., Gu, Y., Safadi, B., Nikam, S., Hubbard, W. C., Tuder, R. M., Twigg, H. L., 3rd, Presson, R. G., Sethi, S., and Petrache, I. (2011) Lung endothelial monocyte-activating protein 2 is a mediator of cigarette smoke-induced emphysema in mice, J Clin Invest 121, 2470-2479.

  • Clendenon, S. G., Young, P. A., Ferkowicz, M., Phillips, C., and Dunn, K. W. (2011) Deep tissue fluorescent imaging in scattering specimens using confocal microscopy, Microsc Microanal 17, 614-617.

  • Crabb, D. W., Zeng, Y., Liangpunsakul, S., Jones, R., and Considine, R. (2011) Ethanol impairs differentiation of human adipocyte stromal cells in culture, Alcohol Clin Exp Res 35, 1584-1592.

  • Dunn, K. W., Kamocka, M. M., and McDonald, J. H. (2011) A practical guide to evaluating colocalization in biological microscopy, Am J Physiol Cell Physiol 300, C723-742.

  • El-Achkar, T. M., McCracken, R., Rauchman, M., Heitmeier, M. R., Al-Aly, Z., Dagher, P. C., and Wu, X. R. (2011) Tamm-Horsfall protein-deficient thick ascending limbs promote injury to neighboring S3 segments in an MIP-2-dependent mechanism, Am J Physiol Renal Physiol 300, F999-1007.

  • Ferkowicz, M. J., and Yoder, M. C. (2011) Whole embryo imaging of hematopoietic cell emergence and migration, Methods Mol Biol 750, 143-155.

  • Hall, A. M., Crawford, C., Unwin, R. J., Duchen, M. R., and Peppiatt-Wildman, C. M. (2011) Multiphoton imaging of the functioning kidney, J Am Soc Nephrol 22, 1297-1304.

  • Huang, Y., Zhang, W., and Gunst, S. J. (2011) Activation of vinculin induced by cholinergic stimulation regulates contraction of tracheal smooth muscle tissue, J Biol Chem 286, 3630-3644.

  • Kalakeche, R., Hato, T., Rhodes, G., Dunn, K. W., El-Achkar, T. M., Plotkin, Z., Sandoval, R. M., and Dagher, P. C. (2011) Endotoxin uptake by S1 proximal tubular segment causes oxidative stress in the downstream S2 segment, J Am Soc Nephrol 22, 1505-1516.

  • Kepner, E. M., Yoder, S. M., Oh, E., Kalwat, M. A., Wang, Z., Quilliam, L. A., and Thurmond, D. C. (2011) Cool-1/betaPIX functions as a guanine nucleotide exchange factor in the cycling of Cdc42 to regulate insulin secretion, Am J Physiol Endocrinol Metab 301, E1072-1080.

  • Kher, R., Sha, E. C., Escobar, M. R., Andreoli, E. M., Wang, P., Xu, W. M., Wandinger-Ness, A., and Bacallao, R. L. (2011) Ectopic expression of cadherin 8 is sufficient to cause cyst formation in a novel 3D collagen matrix renal tubule culture, Am J Physiol Cell Physiol 301, C99-C105.

  • Kim, Y. J., Park, S. J., and Broxmeyer, H. E. (2011) Phagocytosis, a potential mechanism for myeloid-derived suppressor cell regulation of CD8+ T cell function mediated through programmed cell death-1 and programmed cell death-1 ligand interaction, J Immunol 187, 2291-2301.

  • Koehler, K. R., Tropel, P., Theile, J. W., Kondo, T., Cummins, T. R., Viville, S., and Hashino, E. (2011) Extended passaging increases the efficiency of neural differentiation from induced pluripotent stem cells, BMC Neurosci 12, 82.

  • Lee, S. Y., Horbelt, M., Mang, H. E., Knipe, N. L., Bacallao, R. L., Sado, Y., and Sutton, T. A. (2011) MMP-9 gene deletion mitigates microvascular loss in a model of ischemic acute kidney injury, Am J Physiol Renal Physiol 301, F101-109.

  • Li, D., Hallett, M. A., Zhu, W., Rubart, M., Liu, Y., Yang, Z., Chen, H., Haneline, L. S., Chan, R. J., Schwartz, R. J., Field, L. J., Atkinson, S. J., and Shou, W. (2011) Dishevelled-associated activator of morphogenesis 1 (Daam1) is required for heart morphogenesis, Development 138, 303-315.

  • Li, D., Liu, Y., Maruyama, M., Zhu, W., Chen, H., Zhang, W., Reuter, S., Lin, S. F., Haneline, L. S., Field, L. J., Chen, P. S., and Shou, W. (2011) Restrictive loss of plakoglobin in cardiomyocytes leads to arrhythmogenic cardiomyopathy, Hum Mol Genet 20, 4582-4596.

  • Liu, R. Y., Dong, Z., Liu, J., Yin, J. Y., Zhou, L., Wu, X., Yang, Y., Mo, W., Huang, W., Khoo, S. K., Chen, J., Petillo, D., Teh, B. T., Qian, C. N., and Zhang, J. T. (2011) Role of eIF3a in regulating cisplatin sensitivity and in translational control of nucleotide excision repair of nasopharyngeal carcinoma, Oncogene 30, 4814-4823.

  • Liu, Y., Ballman, K., Li, D., Khan, S., Derr-Yellin, E., Shou, W., and Haneline, L. S. (2011) Impaired function of Fanconi anemia type C-deficient macrophages, J Leukoc Biol.

  • Liu, Y., Lee, M. R., Timani, K., He, J. J., and Broxmeyer, H. E. (2011) Tip110 Maintains Expression of Pluripotent Factors in and Pluripotency of Human Embryonic Stem Cells, Stem Cells Dev.

  • Lorenz, K. S., Salama, P., Dunn, K. W., and Delp, E. J. (2011) Digital correction of motion artefacts in microscopy image sequences collected from living animals using rigid and nonrigid registration, J Microsc.

  • Molitoris, B. A. (2011) Disease-specific kidney imaging: introduction, Semin Nephrol 31, 235-236.

  • Molitoris, B. A., and Sandoval, R. M. (2011) Kidney endothelial dysfunction: ischemia, localized infections and sepsis, Contrib Nephrol 174, 108-118.

  • Molitoris, J. K., and Molitoris, B. A. (2011) Circulating micro-RNAs in acute kidney injury: early observations, Clin J Am Soc Nephrol 6, 1517-1519.

  • Ou, X., Chae, H. D., Wang, R. H., Shelley, W. C., Cooper, S., Taylor, T., Kim, Y. J., Deng, C. X., Yoder, M. C., and Broxmeyer, H. E. (2011) SIRT1 deficiency compromises mouse embryonic stem cell hematopoietic differentiation, and embryonic and adult hematopoiesis in the mouse, Blood 117, 440-450.

  • Park, S. J., Beck, B. D., Saadatzadeh, M. R., Haneline, L. S., Clapp, D. W., and Lee, S. H. (2011) Fanconi anemia D2 protein is an apoptotic target mediated by caspases, J Cell Biochem 112, 2383-2391.

  • Presson, R. G., Jr., Brown, M. B., Fisher, A. J., Sandoval, R. M., Dunn, K. W., Lorenz, K. S., Delp, E. J., Salama, P., Molitoris, B. A., and Petrache, I. (2011) Two-photon imaging within the murine thorax without respiratory and cardiac motion artifact, Am J Pathol 179, 75-82.

  • Qu, P., Yan, C., Blum, J. S., Kapur, R., and Du, H. (2011) Myeloid-specific expression of human lysosomal acid lipase corrects malformation and malfunction of myeloid-derived suppressor cells in lal-/- mice, J Immunol 187, 3854-3866.

  • Rajashekhar, G., Gupta, A., Marin, A. J., Friedrich, J. L., Willuweit, A., Berg, D. T., Cramer, M. S., Sandusky, G. E., Sutton, T. A., Basile, D. P., Grinnell, B., and Clauss, M. (2011) Soluble Thrombomodulin Reduces Inflammation and Prevents Microalbuminuria Induced by Chronic Endothelial Activation in Transgenic Mice, Am J Physiol Renal Physiol.

  • Rajashekhar, G., Kamocka, M., Marin, A., Suckow, M. A., Wolter, W. R., Badve, S., Sanjeevaiah, A. R., Pumiglia, K., Rosen, E., and Clauss, M. (2011) Pro-inflammatory angiogenesis is mediated by p38 MAP kinase, J Cell Physiol 226, 800-808.

  • Saleh, M. A., Boesen, E. I., Pollock, J. S., Savin, V. J., and Pollock, D. M. Endothelin receptor A-specific stimulation of glomerular inflammation and injury in a streptozotocin-induced rat model of diabetes, Diabetologia 54, 979-988.

  • Saleh, M. A., Sandoval, R. M., Rhodes, G. J., Campos, S. B., Molitoris, B. A., and Pollock, D. M. (2011) Increased proximal tubular uptake prevents albuminuria in chronic endothelin-1-infused rats as determined by intravital 2-photon microscopy, Experimental Biology.

  • Sandoval, R. M., Wagner, M. C., Patel, M., Campos-Bilderback, S. B., Rhodes, G. J., Wang, E., Wean, S. E., Clendenon, S. C., and Molitoris, B. A. (2011 - in press) Fastingand genetics influence the albumin glomerular sieving coefficient in Munich Wistar rats, J Am Soc Nephrol.

  • Schweitzer, K. S., Johnstone, B. H., Garrison, J., Rush, N. I., Cooper, S., Traktuev, D. O., Feng, D., Adamowicz, J. J., Van Demark, M., Fisher, A. J., Kamocki, K., Brown, M. B., Presson, R. G., Jr., Broxmeyer, H. E., March, K. L., and Petrache, I. (2011) Adipose stem cell treatment in mice attenuates lung and systemic injury induced by cigarette smoking, Am J Respir Crit Care Med 183, 215-225.

  • Vascotto, C., Bisetto, E., Li, M., Zeef, L. A., D'Ambrosio, C., Domenis, R., Comelli, M., Delneri, D., Scaloni, A., Altieri, F., Mavelli, I., Quadrifoglio, F., Kelley, M. R., and Tell, G. (2011) Knock-in reconstitution studies reveal an unexpected role of Cys-65 in regulating APE1/Ref-1 subcellular trafficking and function, Mol Biol Cell 22, 3887-3901.

  • Vyas, P. M., Tomamichel, W. J., Pride, P. M., Babbey, C. M., Wang, Q., Mercier, J., Martin, E. M., and Payne, R. M. (2011) A TAT-Frataxin fusion protein increases lifespan and cardiac function in a conditional Friedreich's ataxia mouse model, Hum Mol Genet.

  • Ward, H. H., Romero, E., Welford, A., Pickett, G., Bacallao, R., Gattone, V. H., 2nd, Ness, S. A., Wandinger-Ness, A., and Roitbak, T. (2011) Adult human CD133/1(+) kidney cells isolated from papilla integrate into developing kidney tubules, Biochim Biophys Acta 1812, 1344-1357.

  • Wu, X., Chen, S., He, Y., Rhodes, S. D., Mohammad, K. S., Li, X., Yang, X., Jiang, L., Nalepa, G., Snider, P., Robling, A. G., Clapp, D. W., Conway, S. J., Guise, T. A., and Yang, F. C. (2011) The haploinsufficient hematopoietic microenvironment is critical to the pathological fracture repair in murine models of neurofibromatosis type 1, PLoS One 6, e24917.

  • Xu, Z., Kamocka, M., Alber, M., and Rosen, E. D. (2011) Computational approaches to studying thrombus development, Arterioscler Thromb Vasc Biol 31, 500-505.

  • Yoshimoto, M., Montecino-Rodriguez, E., Ferkowicz, M. J., Porayette, P., Shelley, W. C., Conway, S. J., Dorshkind, K., and Yoder, M. C. (2011) Embryonic day 9 yolk sac and intra-embryonic hemogenic endothelium independently generate a B-1 and marginal zone progenitor lacking B-2 potential, Proc Natl Acad Sci U S A 108, 1468-1473.

  • Young, P. A., Clendenon, S. G., Byars, J. M., Decca, R. S., and Dunn, K. W. (2011) The effects of spherical aberration on multiphoton fluorescence excitation microscopy, J Microsc 242, 157-165.

  • Young, P. A., Clendenon, S. G., Byars, J. M., and Dunn, K. W. (2011) The effects of refractive index heterogeneity within kidney tissue on multiphoton fluorescence excitation microscopy, J Microsc 242, 148-156.

2010

  • Araki, S., Eitel, J. A., Batuello, C. N., Bijangi-Vishehsaraei, K., Xie, X. J., Danielpour, D., Pollok, K. E., Boothman, D. A., and Mayo, L. D. (2010) TGF-beta1-induced expression of human Mdm2 correlates with late-stage metastatic breast cancer, J Clin Invest 120, 290-302.

  • Babbey, C. M., Bacallao, R. L., and Dunn, K. W. (2010) Rab10 associates with primary cilia and the exocyst complex in renal epithelial cells, Am J Physiol Renal Physiol 299, F495-506.

  • Chen, N. X., Chen, X., O'Neill, K. D., Atkinson, S. J., and Moe, S. M. (2010) RhoA/Rho kinase (ROCK) alters fetuin-A uptake and regulates calcification in bovine vascular smooth muscle cells (BVSMC), Am J Physiol Renal Physiol 299, F674-680.

  • Chevalier, R. L., Forbes, M. S., and Thornhill, B. (2010) Proximal tubular injury and rapid foration of atubular glomeruli in adult mice with unilateral ureteral obstruction: A new look at an old model, ASN abstract number 2042.

  • Crotzer, V. L., Glosson, N., Zhou, D., Nishino, I., and Blum, J. S. (2010) LAMP-2-deficient human B cells exhibit altered MHC class II presentation of exogenous antigens, Immunol